miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|35294574|gb|CA230739.1|CA230739 CCAAAAGCACAACCACAGTTCTTACAGCAACCCAGCAACTGACCTACACATCATTTCGAGTTCGGACTACTGATACAGCT
AGCACTGCCAGATGAAATGAGCCACATATACCAACACCACCCAGCACCACCAACCTAATCTAAGAAGAGGTGAACTTGGT
CACAGCCTTCGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGACGTCTGGATCTCCC
TGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATG
AACGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGAT
CTTGTAGGTCTCCACCGACTTCTTGGCCTTCTTCTTGCCCTTCTTGTCGCCGCCCTCCTTGCCGGCCGACTTGCCCGCCG
GGAGGCGCTTCTCCGACTTGGGGTTNNTTCCCGGNGGGGGNTTTTTGGGCGGGGGGTTNTTNCTCGGNGGGGCTCCTCCG
CCGCCGGTTATTTTGCGCCTTACGCGCCATCGATGCCGGCTTGCTGTTGGCGTGAGGCTTCAGG




Most similar to sp|P54348|H2B5_MAIZE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P54348|H2B5_MAIZE Histone H2B.5 OS=Zea mays PE=2 SV=3
          Length = 154

 Score =  178 bits (452), Expect(2) = 2e-45
 Identities = 97/118 (82%), Positives = 98/118 (83%)
 Frame = -3

Query: 496 SEKRLPXXXXXXXXXXXXXXXXXXXKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI 317
           +EKRLP                   KSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI
Sbjct: 37  AEKRLPAGKSAGKEGGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI 96

Query: 316 NDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           NDIFEKLA EAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 97  NDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154



 Score = 25.4 bits (54), Expect(2) = 2e-45
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 623 LKPHANSKPASMARKAQNNRRRRSPXEXXPPAQKXPXGXXPQVGEAPP 480
           + P A  KPA  A+K         P E   PA+K P G  P+  +  P
Sbjct: 1   MAPKAEKKPA--AKKVAEEE----PSEKAAPAEKAPAGKKPKAEKRLP 42


>sp|P27807|H2B1_WHEAT Histone H2B.1 OS=Triticum aestivum PE=1 SV=3
          Length = 152

 Score =  181 bits (458), Expect = 4e-45
 Identities = 98/118 (83%), Positives = 99/118 (83%)
 Frame = -3

Query: 496 SEKRLPXXXXXXXXXXXXXXXXXXXKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI 317
           +EKRLP                   KSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI
Sbjct: 35  AEKRLPAGKSAAKEGGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI 94

Query: 316 NDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           NDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 95  NDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152